DreEX6074412 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44785834-44829441:-
Coord C1 exon
chr19:44829325-44829441
Coord A exon
chr19:44786438-44786551
Coord C2 exon
chr19:44785834-44785929
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTGTATCTCCCTCAGTTC
3' ss Score
9.71
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CGCCATGTGGAAGTCGCTCTACTGGGACAGATGGGACCGTGCTGTCACCCAATTTCCCGAGGAACTACACGACGGGACAGAGCTGTGTGTACACTATCGCCGTACCCAGGGAGTTTG
Seq A exon
TTCTATTCGGACAGTTCGTCCTGTTCCAGACGTCTCTGAATGATGTGGTGGACATTTATGATGGGCCGACACAACAGTCTTCTCTGCTGTCCTCTCTCTCCGGCTCGCACTCAG
Seq C2 exon
GGGAGTCTCTGCCCTTGAGTACTGGAAATCAAATAACTATCAAGTTCAGTACAGTTGGACCAGAGACGGCCAAAGGCTTTCATTTTGTGTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-'30-30,'30-29,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.0=90.0)
A:
PF0043115=CUB=FE(35.8=100)
C2:
PF0043115=CUB=PD(29.2=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGTGGAAGTCGCTCTAC
R:
TGATACACAAAATGAAAGCCTTTGG
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]