MmuEX6053513 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47585261-47652014:-
Coord C1 exon
chr15:47651898-47652014
Coord A exon
chr15:47587514-47587627
Coord C2 exon
chr15:47585261-47585464
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCTGGTTCCTGTTGCTCAGTGG
3' ss Score
4.27
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CACCCTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAAACTACCCCAAAAATTACAGTGTGGACCACAATTGTGTTTATTCTATAGCAGTTCCCAAGGAGTTTG
Seq A exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTTATCTTCCCTCTCGGGATCCCATTCAG
Seq C2 exon
CCGTTCCTAGAACAAGCTCTACACAGTGCAGTTCTGTGCCCGAGCCAAGATTTGGAAGAAGGATTGGCAATGACTTTGCAGTTGGTTCATTGGTCCTTTTTGAGTGTAATCCAGGATACATTCTCCATGGCTCCAGAGCCATTAGGTGTGAAACAGTACCCAATTCTTTGGCGCAGTGGAATGATTCCTTACCTACATGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'47-37,'47-35,49-37=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.051 C2=0.006
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(88.1=92.5)
A:
PF0043115=CUB=FE(35.8=100)
C2:
PF0043115=CUB=PD(11.9=7.2),PF0008415=Sushi=WD(100=94.2)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGTGGAAGTCGTTCAAC
R:
CTCTGGAGCCATGGAGAATGT
Band lengths:
254-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: