GgaEX6022119 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139091443-139102359:-
Coord C1 exon
chr2:139102243-139102359
Coord A exon
chr2:139092193-139092306
Coord C2 exon
chr2:139091443-139091541
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTCCTGTTTGATCAGTGG
3' ss Score
7.14
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CACCCTGTGGAAGTCGGTCAACAGGCTCTGAAGGAACTGTATTATCACCGAACTACCCCAAGAATTACAGTGTTGGTCACAGCTGTGTTTACTCTATCACTGTTCCTAAGGAATTTG
Seq A exon
TGGTTTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCATGATGTGGTTGAAGTATACGATGGCCCAACTCTGCAGTCATCTTTGTTATCTTCTCTCTCAGGATCTCATTCAG
Seq C2 exon
TAGGTGAATCCCTTCCGTTGAGCTCAGGTAACCAGATCACAGTTAGATTTACTTCAGTTGGACCAATAACAGCTAAAGGATTTCATTTTGTTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'32-33,'32-32,33-33=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.6=92.5)
A:
PF0043115=CUB=FE(35.5=100)
C2:
PF0043115=CUB=PD(29.0=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTGTGGAAGTCGGTCAA
R:
AAACAAAATGAAATCCTTTAGCTGTT
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]