HsaEX6081993 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113418753-113484936:-
Coord C1 exon
chr8:113484820-113484936
Coord A exon
chr8:113421148-113421261
Coord C2 exon
chr8:113418753-113418956
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCGGGTTCCTGTTGATCAGTGG
3' ss Score
3.28
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CGCCCTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACTGTTCTATCACCAAACTATCCAAAAAATTACAGTGTGGGACATAATTGTGTTTATTCTATAGCAGTTCCAAAGGAGTTTG
Seq A exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTATGATGGGCCAACTCAGCAATCTTCTCTGTTATCTTCCCTCTCAGGATCCCATTCAG
Seq C2 exon
CTGTTCCTAGAACAAGTTCTACACAATGCAGTTCTGTGCCTGAACCAAGATTCGGAAGAAGAATTGGCAATGAATTTGCAGTCGGTTCATCGGTTCTTTTTGATTGTAATCCAGGATATATTCTCCATGGATCCATAGCAATTAGGTGTGAAACAGTGCCCAATTCTTTGGCCCAGTGGAATGATTCCTTACCTACTTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'39-41,'39-39,40-41=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.026 C2=0.004
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.9=92.5)
A:
PF0043115=CUB=FE(35.8=100)
C2:
PF0043115=CUB=PD(9.5=5.8),PF0008415=Sushi=WD(100=94.2)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCAGAAGGCACTGTTCT
R:
TGGGCACTGTTTCACACCTAA
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)