GgaEX6022119 @ galGal4
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:132920885-132931805:-
Coord C1 exon
chr2:132931689-132931805
Coord A exon
chr2:132921635-132921748
Coord C2 exon
chr2:132920885-132920980
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTCCTGTTTGATCAGTGG
3' ss Score
7.14
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CACCCTGTGGAAGTCGGTCAACAGGCTCTGAAGGAACTGTATTATCACCGAACTACCCCAAGAATTACAGTGTTGGTCACAGCTGTGTTTACTCTATCACTGTTCCTAAGGAATTTG
Seq A exon
TGGTTTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCATGATGTGGTTGAAGTATACGATGGCCCAACTCTGCAGTCATCTTTGTTATCTTCTCTCTCAGGATCTCATTCAG
Seq C2 exon
GTGAATCCCTTCCGTTGAGCTCAGGTAACCAGATCACAGTTAGATTTACTTCAGTTGGACCAATAACAGCTAAAGGATTTCATTTTGTTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'36-41,'36-39,37-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.9=92.5)
A:
PF0043115=CUB=FE(35.8=100)
C2:
PF0043115=CUB=PD(28.3=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAAGTCGGTCAACAGG
R:
AAACAAAATGAAATCCTTTAGCTGTT
Band lengths:
203-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]