DreEX6043760 @ danRer10
Exon Skipping
Gene
ENSDARG00000098233 | TIAM2 (2 of 2)
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr20:4598933-4603079:+
Coord C1 exon
chr20:4598933-4599058
Coord A exon
chr20:4602688-4602796
Coord C2 exon
chr20:4602900-4603079
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTTTCAATCTCTCTTCCAGAAA
3' ss Score
10.65
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
ATGGAGTCACTGTTCGGCAGCCTGCCTGAGATGCTGGACTTCCAGAGGGTTTTCCTGCAGACCCTAGAGGACAGGACAACTTCCTCACCAGACTACCATGCGCTAGACTGTCCAGAGAAACTCAAG
Seq A exon
AAACTTCTCTTCTCCTTGGGCGGATCCTTCTTATACTATGCAGATCACTTCAAACTTTACAGCGGCTTCTGCGCCAATCACATTAAGGTGCAGAAAGTTCTGGAAAGAG
Seq C2 exon
CTAAAACAGACCGTGCATTCAAGGAGTTCCTGGAAGCGAGGAATCCCACAAAACAGCACTCGTCCACGCTGGAGTCGTACCTCATTAAACCTGTGCAGAGAGTCCTGAAGTATCCACTGCTGCTGAGGGAACTGGTGTCTCTCACTGACCCAGAGAGCGACCAGCACAACCACCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098233-'21-25,'21-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGAGATGCTGGACTTC
R:
AGAGACACCAGTTCCCTCAGC
Band lengths:
247-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]