DreEX6043765 @ danRer10
Exon Skipping
Gene
ENSDARG00000098233 | TIAM2 (2 of 2)
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr20:4581673-4586447:+
Coord C1 exon
chr20:4581673-4581732
Coord A exon
chr20:4586049-4586216
Coord C2 exon
chr20:4586343-4586447
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATCTTGCCTGTTGTCAACAGAGA
3' ss Score
6.9
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATATTTGAAGGATATTCCTCTGGATCGTTTGGTCATCCATCCACGCAAAGCAGCTCGGAG
Seq A exon
AGACTGGACATCTTCACCAAACCGCATGCAGCAGCTCCCCCTGATGGTCATCTGTGGGACTGCAGCCTGGAGAGCCTGGTGTTTGTGCTCGCCCCGGACGGTCAGATCATCAGCGTCCCAATCAAACACGACTCTCTGGTGTCCGATGTCCTCACGCTGGCGTGTAAG
Seq C2 exon
GCAAAGCATCTGGATCCAGCTCTGCACGTCCTGCACATGAGGAGACATCTGGGCCAGGATGTTGAGCGGATCACTCCAGCACCCACAGATCTGCTCAAAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098233-'10-12,'10-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0219610=RBD=PU(54.4=55.4)
C2:
PF0219610=RBD=PD(42.1=68.6)
Main Skipping Isoform:
ENSDART00000168322fB777
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATATTCCTCTGGATCGTTTGGT
R:
AGGGTTTTGAGCAGATCTGTGG
Band lengths:
155-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]