MmuEX6074980 @ mm10
Exon Skipping
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3439701-3450336:+
Coord C1 exon
chr17:3439701-3439772
Coord A exon
chr17:3448378-3448536
Coord C2 exon
chr17:3450232-3450336
Length
159 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTCACTGCACACAGGCC
3' ss Score
7.06
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
ATGTTTGATTCTAGCCACAGCCATGGATTTCTTGGAACTCAGCTACCTCAAAAGTCCACTAACTCCAACAAG
Seq A exon
GCCCATGACCTGCATCTGTATGGCTCCGCAGTAGACAGCGCGCTGCGAGACAGCATGTGGGAAGTCCAGACTTATGTCCACTTCCAGGATAACGAAGGAGTTACTGTGACCATCAAGCCAGAGCACAGGGTGGAAGATGTTCTGGCTTTGGTGTGCAAG
Seq C2 exon
ATGAGACAGTTGGAACCCACTCACTATGGTCTTCAGCTCCGAAAGGTGGTCGATAAAAGTGTGGAGTGGTGTGTGCCCGCGCTGTATGAATACATGCAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800-'28-22,'28-21,29-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0219610=RBD=PU(50.9=54.7)
C2:
PF0219610=RBD=PD(45.6=74.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGATTCTAGCCACAGCCA
R:
TTGCATGTATTCATACAGCGCG
Band lengths:
170-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types