HsaEX0064963 @ hg19
Exon Skipping
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:11806]
Coordinates
chr6:155486397-155500277:+
Coord C1 exon
chr6:155486397-155486543
Coord A exon
chr6:155497950-155498111
Coord C2 exon
chr6:155500173-155500277
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGCATCTACAAACAGGTC
3' ss Score
7.66
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTATGTTCTAGAGATGACTCTGCTCTCCGGAAAAGGACACTGTCACTGACCCAGCGAGGGAGAAACAAGAAGGGAATATTTTCTTCGTTAAAAGGGCTGGACACACTGGCCAGAAAAGGCAAGGAGAAGAGACCTTCTATAACTCAG
Seq A exon
GTCGATGAACTTCTGCATATATATGGTTCAACAGTAGACGGTGTTCCCCGAGACAATGCATGGGAAATCCAGACTTATGTCCACTTTCAGGACAATCACGGAGTTACTGTAGGGATCAAGCCAGAGCACAGAGTAGAAGATATTTTGACTTTGGCATGCAAG
Seq C2 exon
ATGAGGCAGTTGGAACCCAGCCATTATGGCCTACAGCTTCGAAAATTAGTAGATGACAATGTTGAGTATTGCATCCCTGCACCATATGAATATATGCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426-'9-13,'9-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0219610=RBD=PU(56.9=53.7)
C2:
PF0219610=RBD=PD(39.2=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGACTCTGCTCTCCGGA
R:
CTGTTGTTGCATATATTCATATGGTG
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)