Special

BtaEX0036428 @ bosTau6

Exon Skipping

Gene
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr9:93160205-93172096:+
Coord C1 exon
chr9:93160205-93160276
Coord A exon
chr9:93170455-93170616
Coord C2 exon
chr9:93171992-93172096
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGGACCTCAAAACAGGTG
3' ss Score
5.59
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
ATATTCGATTCCAGTGGCAGCCATGGATTTTCCGGAACTCAGCTACCTCAAAGCTCCAATAACTCCAGTGAG
Seq A exon
GTGGATGACCTGCTACACTTATACGGGTCAGCAGTGGATGGCGTTCCCCGAGACGGCACGTGGGAGAGCCAGGTTGACGTTCACTTTCCGGATCGTCAAGTCGTGACTGTGATGGTCAAGCCGGAAACCAGGGTAGAAGATGTTCTGACTCTGGCCTGCAAG
Seq C2 exon
ATGAGGCAGTTGGAACCCAGCCATTATGGCCTACAACTTCGGAAGTTAGTGGACGAGAACGTTGAGTACTGTATTCCTGCACCCTACGAATATATGCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010047_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
PF0219610=RBD=PU(56.6=55.6)
C2:
PF0219610=RBD=PD(39.6=60.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCGATTCCAGTGGCAGCC
R:
CCTGCATATATTCGTAGGGTGCA
Band lengths:
171-333
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development