BtaEX0036428 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010047 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr9:93160205-93172096:+
Coord C1 exon
chr9:93160205-93160276
Coord A exon
chr9:93170455-93170616
Coord C2 exon
chr9:93171992-93172096
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGGACCTCAAAACAGGTG
3' ss Score
5.59
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
ATATTCGATTCCAGTGGCAGCCATGGATTTTCCGGAACTCAGCTACCTCAAAGCTCCAATAACTCCAGTGAG
Seq A exon
GTGGATGACCTGCTACACTTATACGGGTCAGCAGTGGATGGCGTTCCCCGAGACGGCACGTGGGAGAGCCAGGTTGACGTTCACTTTCCGGATCGTCAAGTCGTGACTGTGATGGTCAAGCCGGAAACCAGGGTAGAAGATGTTCTGACTCTGGCCTGCAAG
Seq C2 exon
ATGAGGCAGTTGGAACCCAGCCATTATGGCCTACAACTTCGGAAGTTAGTGGACGAGAACGTTGAGTACTGTATTCCTGCACCCTACGAATATATGCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010047_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0219610=RBD=PU(56.6=55.6)
C2:
PF0219610=RBD=PD(39.6=60.0)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCGATTCCAGTGGCAGCC
R:
CCTGCATATATTCGTAGGGTGCA
Band lengths:
171-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development