DreEX6056197 @ danRer10
Exon Skipping
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:49034249-49049003:+
Coord C1 exon
chr17:49034249-49034395
Coord A exon
chr17:49047554-49047721
Coord C2 exon
chr17:49048899-49049003
Length
168 bp
Sequences
Splice sites
3' ss Seq
CATGCTCTTCTCTTTCCCAGCGG
3' ss Score
9.77
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
ATCTGTTCCAGAGATGAGGCCACGATGCGAAAGCGCTCTCTGTCTCTCTCCCACAGAGGCCGCAGCAAGAAAGGGGTCTTTTCATCCCTTAAGGGCCTGGATACTCTTACCAAGCGAGGCCATGAAAAAAAGCATTCTCTCTCACAG
Seq A exon
CGGTTAGGCAGTTTGACGAATGTTTACTCAATTGTGCCACCTGAAGGCAGCCAGTGGGATTGCAGTCGAGAAAGCACAACATGCATCTACATGCCAAACTGCCAGACTGTTACTGTTCTCCTGAAAAGTCATCACACTGTCATGGATGTGTTGGCTGAGACCTGCATG
Seq C2 exon
CTCGTGGGCCTGGACCCCAGCACACACTGTTTGAGGCTGAGAAGATTCACAGGAGACAAGATGGAGATCTCAACACCATCAGCTCATGAGCTTCTGCAAGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780-'10-14,'10-11,12-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0219610=RBD=PU(54.4=55.4)
C2:
PF0219610=RBD=PD(42.1=68.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGAGATGAGGCCACGAT
R:
AGCCTTGCAGAAGCTCATGAG
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]