RnoEX0090593 @ rn6
Exon Skipping
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44358857-44368580:+
Coord C1 exon
chr1:44358857-44358928
Coord A exon
chr1:44366948-44367106
Coord C2 exon
chr1:44368476-44368580
Length
159 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTCACCGCGCACAGGTC
3' ss Score
7.46
5' ss Seq
AAGGTGATC
5' ss Score
4.41
Exon sequences
Seq C1 exon
ATGTTTGATTCGAGCCACAGCCATGGATATCTTGGAACTCAACTACCTCAAAACTCCACTAACTCCAGTGAG
Seq A exon
GTCCATGACCTGCATCTGTATGGCTCCTCAGCAGACAGCACTCTCCGAGACAGCACGTGGGAAGTACAGACTTATGTCCACTTCCAGGATAACGAAGGAGTCACTGTGATCATCAAGCCAGAGCACAGGGTGGAAGATGTTCTGGCTTTGGCATGCAAG
Seq C2 exon
ATGAGGCACTTGGAACCCACTCGCTATGGTCTTCAGCTCCGAAAGGTGGTGGATGAAAGTGTGGAGTGGTGTGTGCCCGCGTTGTATGAGTACATGCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0219610=RBD=PU(53.7=54.7)
C2:
PF0219610=RBD=PD(42.6=65.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATTCGAGCCACAGCCAT
R:
TCCTGCATGTACTCATACAACGC
Band lengths:
170-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]