Special

GgaEX0020306 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr3:52436401-52443939:+
Coord C1 exon
chr3:52436401-52436463
Coord A exon
chr3:52441061-52441225
Coord C2 exon
chr3:52443835-52443939
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTGGCTTCCAGCAGCAA
3' ss Score
5.94
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
ATTTTTGACTCCACTGGAGGACATGGATTTGCCGGTGTCCAGAATTCAGCCAACTCTGCTGAG
Seq A exon
CAAGTTGATGAATTTTTGAATGTCTACTGCTCAGTACCGGACAGCATCCAGAAGGAGAATGCTTGGGAAACACAAACGTATGTTCACTTCTGTGACGGTCAAGGAGTAGCTTTAACTCTGAAACCAGACCACAGGGTGGAAGATGTTCTGTCTCTGGCATGCAAG
Seq C2 exon
ATGAAACAACTGGAGCCAAGGAACTACGGTCTACAACTCAGAAGATTGGTTGATGAAAATACTGAATACTGTGCTCCTGAACCATACGAATATATAGTAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
PF0219610=RBD=PU(56.6=54.5)
C2:
PF0219610=RBD=PD(39.6=60.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACTGGAGGACATGGATT
R:
ATTCGTATGGTTCAGGAGCACA
Band lengths:
146-311
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]