DreEX6047944 @ danRer10
Exon Skipping
Gene
ENSDARG00000010572 | slc25a25a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25a [Source:ZFIN;Acc:ZDB-GENE-040426-2396]
Coordinates
chr8:2552839-2556324:-
Coord C1 exon
chr8:2556237-2556324
Coord A exon
chr8:2555599-2555710
Coord C2 exon
chr8:2552839-2552997
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTCCTATTTTCTAGCAT
3' ss Score
9.91
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTCAGGTGAACGCCAACGACATTGTGAACTCTCTGCGAGATCTTGGTGTCCACATTTCCCTAAAGCAAGCGGAGAAAGTCCTTAAAAG
Seq A exon
CATGGACAAAAACGGCACAATGACTATTGACTGGAATGAATGGAAGAAGTATCCCACGCTACAGCCTGCCGAAAACATTCCCGAAATCATCCTGTACTGGAAACACTCAACG
Seq C2 exon
ATCTTCGATGTTGGTGAGAGTTTGATGGTGCCAGATGAGTTTACAGTGGAAGAGCACCTAACTGGGATGTGGTGGAGGCATCTGGTGTCCGGTGGAGGAGCTGGAGCTGTTTCTCGAACCTGCACCGCTCCACTTGACCGCCTTAAAGTGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010572-'6-4,'6-2,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
PF134991=EF-hand_7=PD(25.8=44.7)
C2:
PF0015322=Mito_carr=PU(34.4=60.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAACGCCAACGACATTG
R:
GCATGAGCACTTTAAGGCGGT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]