DreEX6048171 @ danRer10
Exon Skipping
Gene
ENSDARG00000007125 | asb6
Description
ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
Coordinates
chr8:6864260-6866890:-
Coord C1 exon
chr8:6866784-6866890
Coord A exon
chr8:6864456-6864564
Coord C2 exon
chr8:6864260-6864346
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTACTTTGCATTAGATT
3' ss Score
7.31
5' ss Seq
ACGGTGATT
5' ss Score
4.54
Exon sequences
Seq C1 exon
ACCCTGTATCGTACTACAACCCTTTACACATCGCAGTACTGAGAAACAAACCAGACATGGTGCGAATGTTGATCTCGAGTGGAGCTGATATTGACAAAAGAGACAGG
Seq A exon
ATTCATGAAAGCAGCCCTATTGACTTGGCCAGTGAGGAGGCTGATAAGCTGCCGTGTCTCCGTGTGCTTCTGGATTTTGGTGCTGATGTGAATGCAAAAGACAAGAACG
Seq C2 exon
GAAAAACAGCACTGCTTCATGCTCTGGCCAGCAGCGATGGACTCACGGTCAAAAACATGGACAACATACAGCTGCTTCTAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007125-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(37.8=94.4),PF127962=Ank_2=PU(6.6=11.1)
A:
PF127962=Ank_2=FE(59.0=100)
C2:
PF127962=Ank_2=PD(31.1=63.3),PF127962=Ank_2=PU(20.8=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGTATCGTACTACAACCCT
R:
CTCTTTCTAGAAGCAGCTGTATGT
Band lengths:
194-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]