GgaEX0005867 @ galGal4
Exon Skipping
Gene
ENSGALG00000004378 | ASB6
Description
ankyrin repeat and SOCS box protein 6 [Source:RefSeq peptide;Acc:NP_001025859]
Coordinates
chr17:5648985-5650176:-
Coord C1 exon
chr17:5650070-5650176
Coord A exon
chr17:5649549-5649657
Coord C2 exon
chr17:5648985-5649083
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTTGCCCTGTACAGATC
3' ss Score
10.93
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
ACCCGGTTACCTACTACACCCCGCTGCACATTGCAGTGCTTCGCAACCAGCCTGACATGGTGGAGCTCCTGGCACGCCACGGGGCCGACATCAACCGCAGAGACCGG
Seq A exon
ATCCATGAGAGCAGTCCCCTTGATCTGGCCAGTGAGGAGCCCGAGCGGCTGCCATGCCTCCAGAGGCTGCTTCAGCTTGGGGCCGATGTCAACGCAGCTGACAAAACTG
Seq C2 exon
GAAAGACAGCGTTGTTGCACGCCTTGTTGCATTGTTATTGCAGCAGTGATGTCGTCCAGATCCACAACACAGAGAGCATCCGTCTCCTGCTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.135 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(34.7=94.4),PF127962=Ank_2=PU(0.1=0.0)
A:
PF127962=Ank_2=FE(46.2=100)
C2:
PF127962=Ank_2=FE(42.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGTTACCTACTACACCCC
R:
CCTTCCAGCAGGAGACGGAT
Band lengths:
203-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]