MmuEX6100298 @ mm10
Exon Skipping
Gene
ENSMUSG00000039483 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:MGI Symbol;Acc:MGI:1919573]
Coordinates
chr2:30824641-30825761:-
Coord C1 exon
chr2:30825655-30825761
Coord A exon
chr2:30825452-30825560
Coord C2 exon
chr2:30824641-30824727
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGCTGTCCCCTTTGGCTCAGATC
3' ss Score
7.1
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACCCTGTTACCTACTACACAGCCCTGCACATTGCTGTCCTGAGAAACCAGCCTGACATGGTTGAGCTGCTGGTGCGCCACGGGGCTGACATCAACAGGAGGGACCGG
Seq A exon
ATCCATGAGAGCAGCCCCTTGGATCTGGCCAGCGAGGAACCCGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAATGCAGCTGACAAGAATG
Seq C2 exon
GGAAGACAGCTTTACTTCACGCCCTGGCCAGCAGCGATGGTGTGCAGATCCACAACACAGAAAACATCCGGCTCCTCCTGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039483-'9-7,'9-6,11-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.189 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(37.0=94.4),PF127962=Ank_2=PU(0.1=0.0)
A:
PF127962=Ank_2=FE(41.9=100)
C2:
PF127962=Ank_2=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTTACCTACTACACAGCC
R:
CAGGAGGAGCCGGATGTTTTC
Band lengths:
186-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types