GgaEX0005867 @ galGal3
Exon Skipping
Gene
ENSGALG00000004378 | ASB6
Description
NA
Coordinates
chr17:6203594-6204783:-
Coord C1 exon
chr17:6204679-6204783
Coord A exon
chr17:6204158-6204266
Coord C2 exon
chr17:6203594-6203692
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTTGCCCTGTACAGATC
3' ss Score
10.93
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
CCGGTTACCTACTACACCCCGCTGCACATTGCAGTGCTTCGCAACCAGCCTGACATGGTGGAGCTCCTGGCACGCCACGGGGCCGACATCAACCGCAGAGACCGG
Seq A exon
ATCCATGAGAGCAGTCCCCTTGATCTGGCCAGTGAGGAGCCCGAGCGGCTGCCATGCCTCCAGAGGCTGCTTCAGCTTGGGGCCGATGTCAACGCAGCTGACAAAACTG
Seq C2 exon
GAAAGACAGCGTTGTTGCACGCCTTGTTGCATTGTTATTGCAGCAGTGATGTCGTCCAGATCCACAACACAGAGAGCATCCGTCTCCTGCTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.135 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(34.7=94.4),PF127962=Ank_2=PU(0.1=0.0)
A:
PF127962=Ank_2=FE(46.2=100)
C2:
PF127962=Ank_2=FE(42.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTTACCTACTACACCCCG
R:
CCTTCCAGCAGGAGACGGAT
Band lengths:
202-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]