HsaEX6063421 @ hg19
Exon Skipping
Gene
ENSG00000148331 | ASB6
Description
ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:17181]
Coordinates
chr9:132400852-132401787:-
Coord C1 exon
chr9:132401681-132401787
Coord A exon
chr9:132401481-132401589
Coord C2 exon
chr9:132400852-132400938
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCTGTGCTTCCTTGGCTCAGATC
3' ss Score
6.74
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
ACCCAGTCACCTACTACACGGCCTTGCACATCGCCGTCCTGCGGAACCAGCCGGACATGGTGGAGCTGCTGGTGCATCACGGGGCCGACGTTAATCGGAGGGACCGG
Seq A exon
ATCCACGAGAGTAGCCCCTTGGACCTGGCCAGCGAGGAGCCTGAGCGCCTGCCCTGCCTGCAGCGCCTCCTGGACCTTGGAGCTGATGTCAATGCCGCTGACAAGCATG
Seq C2 exon
GAAAAACTGCTCTGCTCCATGCTCTGGCCAGCAGCGACGGGGTGCAGATCCACAATACTGAGAACATTCGTCTCTTACTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148331-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.230 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(35.8=94.4),PF127962=Ank_2=PU(0.1=0.0)
A:
PF127962=Ank_2=FE(48.6=100)
C2:
PF127962=Ank_2=FE(39.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGTCACCTACTACACGG
R:
CTCCTTCCAGTAAGAGACGAATGT
Band lengths:
194-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)