DreEX6049880 @ danRer10
Exon Skipping
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23772794-23774848:+
Coord C1 exon
chr8:23772794-23772943
Coord A exon
chr8:23773766-23773854
Coord C2 exon
chr8:23774671-23774848
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTACAGGTA
3' ss Score
12.43
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGGTCTCGTATACATCTGAGTGTTTTCACTGTAAGCCTGGTACTTACAGTGATAAACCAGGAGCTGCTCGCTGTGTCCCGTGTGCTGCTAATTCATACTCTAATAAAGGAGCCACTGCTTGTCAAACGTGTGATATGGACAAATATTCAG
Seq A exon
GTATTGGATCTGGAGCTTGTACACAGAGACCGGCCTGCAAAACCTCTGATTACTTCTACACCCACACACCCTGTGATTCCAGCGCTCAG
Seq C2 exon
ACTCAGCTGATGTATAAGTGGACTGAGCCCAAGATCTGCAGTGAGAGTTTGGAGGGTGCAGTGAAGCTCCCGGCATCAGGAGAGATGATGTCCTGTCCTCCGTGCAATCCCGGCTTCTTCTCCAGCAACAGCTCCAGCTGTGAACCCTGTCCACGCGGCTTCTACTCCAACGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075629=NCD3G=WD(100=90.2)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(66.7=36.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCCGTGTGCTGCTAATT
R:
ATCATCTCTCCTGATGCCGGG
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]