BtaEX6016113 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34332776-34343799:-
Coord C1 exon
chr3:34343650-34343799
Coord A exon
chr3:34336756-34336844
Coord C2 exon
chr3:34332776-34332953
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTTCTGCCATTTAGAGA
3' ss Score
5.99
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGGTGGCCTACACTTCAGAATGCTTCCCCTGCAAACCTGGCACGTACGCAGACCAGCAGGGCTCCTCTTCCTGCAAACTATGCCCAGCCAACTTTTATTCCAATAAGGGAGAAACTTCCTGTCACCAGTGTGACCCTGACAAATATTCAG
Seq A exon
AGAAAGGATCCTCCACCTGCAAAGCACGGCCAGCCTGCACAGATAAAGATTACTTCTACACTCACACAGCCTGTGATGCCAATGGAGAG
Seq C2 exon
ACGCAGCTCATGTACAAATGGGCCCAGCCAAAAATCTGCAGCGAGGATCTGGAGGGCGCAGTGAAGCTGCCTGCCTCTGGCTTGAAGACCGGCTGCCCACCCTGCAACCCAGGCTTCTTCAAGACCAACAGTAGCACCTGCGAGCCCTGCCCTTATGGCTCTTACTCCAATGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136-'8-9,'8-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=86.3),PF075629=NCD3G=WD(100=56.9)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(64.7=36.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAGAATGCTTCCCCTGC
R:
GCTGGGCCCATTTGTACATGA
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]