RnoEX6011112 @ rn6
Exon Skipping
Gene
ENSRNOG00000020272 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr2:211261076-211270586:-
Coord C1 exon
chr2:211270437-211270586
Coord A exon
chr2:211263597-211263685
Coord C2 exon
chr2:211261076-211261253
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTCTCACTTTGGTCATTTAGAGA
3' ss Score
5.68
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGGTAGCTTATACCTCTGAGTGTTTCCCCTGCAAGCCTGGCACCTATGCCGCCAAGCAGGGCTCCCCTTTCTGCAAGCTTTGTCCAGCCAACTCTTACTCAAACAAAGGAGAAACTTCATGTCATCCGTGTGATGCTGACAAATACTCAG
Seq A exon
AGAAAGGATCTTCCACCTGCAAAGTGCGCCCGGCCTGCACAGACAAGGATTACTTCTACACTCACACAGCCTGCGACGCTCAGGGAGAG
Seq C2 exon
ACACAGCTCATGTACAAATGGGCCATGCCAAAAATCTGTGGCGAGGACCTGGAGGGAGCCGTAAAGCTTCCCGCCTCCGGCGTGAAGACCCGCTGCCCTCCCTGTAACCCAGGCTTCTTCAAGACCAACAACAGCACCTGTGAACCGTGCCCATACGGCTCGTACTCCAATGGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020272-'12-10,'12-9,16-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=64.7),PF075629=NCD3G=WD(100=90.2)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(64.7=36.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGTTTCCCCTGCAAGC
R:
CGCCACAGATTTTTGGCATGG
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]