MmuEX6073419 @ mm10
Exon Skipping
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108472723-108481125:-
Coord C1 exon
chr3:108480976-108481125
Coord A exon
chr3:108474961-108475049
Coord C2 exon
chr3:108472723-108472900
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTCTCACTGTGGTCATTTAGAAA
3' ss Score
6.15
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGGTGGCTTACACCTCCGAGTGTTTCCCCTGCAAGCCTGGCACATACGCTGCCAAGCAGGGCTCCCCTTTCTGCAAGCTTTGTCCAGCCAACTACTACTCAAACAAAGGAGAAACGTCCTGCCATCCGTGTGATGCTGACAAATACTCAG
Seq A exon
AAAAAGGATCTTCCACCTGCAAAGTGCGCCCAGCCTGCACAGACAAGGACTATTTCTACACCCACACAGCCTGTGATGCTCAGGGAGAG
Seq C2 exon
ACACAGCTCATGTACAAATGGGCCATACCAAAAATCTGCGGTGAGGACCTGGAGGGGGCGGTGAAGCTGCCCGCCTCTGGTGTGAAGACCCGCTGCCCACCCTGTAACCCGGGCTTCTTCAAAACCGACAACAGCACCTGTGAACCTTGCCCATACGGCTCGTACTCCAACGGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412-'13-12,'13-11,17-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=64.7)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(64.7=36.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGAGAAACGTCCTGCC
R:
GGTTTTGAAGAAGCCCGGGTT
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types