HsaEX0034021 @ hg19
Exon Skipping
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:29618]
Coordinates
chr1:109716310-109730976:+
Coord C1 exon
chr1:109716310-109716459
Coord A exon
chr1:109727667-109727755
Coord C2 exon
chr1:109730799-109730976
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTTTGGCAATTTAGAGA
3' ss Score
3.87
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGGTGGCCTACACTTCAGAATGCTTCCCCTGCAAACCTGGCACGTATGCAGACAAGCAGGGCTCCTCTTTCTGCAAACTTTGCCCAGCCAACTCTTATTCAAATAAAGGAGAAACTTCTTGCCACCAGTGTGACCCTGACAAATACTCAG
Seq A exon
AGAAAGGATCTTCTTCCTGTAACGTGCGCCCAGCTTGCACAGACAAAGATTATTTCTACACACACACGGCCTGCGATGCCAACGGAGAG
Seq C2 exon
ACACAACTCATGTACAAATGGGCCAAGCCGAAAATCTGTAGCGAGGACCTTGAGGGGGCAGTGAAGCTGCCTGCCTCTGGTGTGAAGACCCACTGCCCACCCTGCAACCCAGGCTTCTTCAAAACCAACAACAGCACCTGCCAGCCCTGCCCATATGGTTCCTACTCCAATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=86.3),PF075629=NCD3G=WD(100=90.2)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(64.7=36.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCTTCCCCTGCAAACCT
R:
CCTCGCTACAGATTTTCGGCT
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)