GgaEX6000360 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8091645-8095459:+
Coord C1 exon
chr1:8091645-8091797
Coord A exon
chr1:8092373-8092461
Coord C2 exon
chr1:8095279-8095459
Length
89 bp
Sequences
Splice sites
3' ss Seq
AAGACTATTTTTCTTTTTAGAAG
3' ss Score
6
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGTTGCATATACATCTGAATGCTTCCCATGCAAGCCTGGTACTTACAGCGACAAACCAGGTTCATCTGGCTGCCAAGAATGTCCAAGAAATACTTACTCTGAGAAGGGAGCTAAAGAGTGCACCAAGTGTAAAGAAGAAATCTATTATGCAG
Seq A exon
AAGAGGGATCCAGTGCGTGTATAGAGCGTCCTCCATGCACAAGCAAAGACTTTTTCCAGATCCACACCCCGTGCGATAAGGAAGGAAAA
Seq C2 exon
ACTCAGATCATGTACAAATGGATCGAACCCAAGATCTGCAGAGAGGATCTCCCTGATGCATTGACCCTACCTCCTTCTGGAGAGAGGAAGGAATGTCCACCCTGCAATCCTGGCTTTTACAGCAATGCCTCATCCTCCTGTACTCCCTGCCCACAGGGCATGTTTTCAGATGGGACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8),PF076998=GCC2_GCC3=PU(53.8=40.4)
A:
PF076998=GCC2_GCC3=PD(43.6=56.7)
C2:
PF076998=GCC2_GCC3=PU(65.7=37.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGACAAACCAGGTTCAT
R:
AGGGTCAATGCATCAGGGAGA
Band lengths:
176-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]