RnoEX0072815 @ rn6
Exon Skipping
Gene
ENSRNOG00000005818 | RGD1563349
Description
similar to RIKEN cDNA 9330182L06 [Source:RGD Symbol;Acc:1563349]
Coordinates
chr4:21627390-21637614:-
Coord C1 exon
chr4:21637462-21637614
Coord A exon
chr4:21636798-21636886
Coord C2 exon
chr4:21627390-21627570
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTGTATGTTACAGAGG
3' ss Score
8.16
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
GAGTGGCGTATACCTCGGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGCTCATTTAACTGCCAAATGTGCCCCAGGAACACCTATTCTGAGAAGGGTGCTAAAGAATGCATCAGGTGTAAGGAGGACTCCCAATTTTCAG
Seq A exon
AGGAAGGAGCCAGTGAGTGTGTGGATCGTCCACCCTGCACTACCAAAGACTATTTCCAGATCCATACTCCCTGTGATGAAGAAGGGAAG
Seq C2 exon
ACACAGATAATGTACAAGTGGATAGAGCCGAAAATCTGCAGGGAAGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCCCCTTGCAACCCAGGATTCTATAACAATGGCTCTTCTTCTTGCCATCCCTGCCCTCCCGGGACGTTTTCGGATGGCACAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005818-'11-12,'11-9,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(65.7=37.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGCCAGGCACTTTCAGCA
R:
CTTCCCTGCAGATTTTCGGCT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]