GgaEX6000360 @ galGal4
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7490855-7494702:+
Coord C1 exon
chr1:7490855-7491007
Coord A exon
chr1:7491583-7491671
Coord C2 exon
chr1:7494522-7494702
Length
89 bp
Sequences
Splice sites
3' ss Seq
AAGACTATTTTTCTTTTTAGAAG
3' ss Score
6
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGTTGCATATACATCTGAATGCTTCCCATGCAAGCCTGGTACTTACAGCGACAAACCAGGTTCATCTGGCTGCCAAGAATGTCCAAGAAATACTTACTCTGAGAAGGGAGCTAAAGAGTGCACCAAGTGTAAAGAAGAAATCTATTATGCAG
Seq A exon
AAGAGGGATCCAGTGCGTGTATAGAGCGTCCTCCATGCACAAGCAAAGACTTTTTCCAGATCCACACCCCGTGCGATAAGGAAGGAAAA
Seq C2 exon
ACTCAGATCATGTACAAATGGATCGAACCCAAGATCTGCAGAGAGGATCTCCCTGATGCATTGACCCTACCTCCTTCTGGAGAGAGGAAGGAATGTCCACCCTGCAATCCTGGCTTTTACAGCAATGCCTCATCCTCCTGTACTCCCTGCCCACAGGGCATGTTTTCAGATGGGACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'10-12,'10-9,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(65.7=37.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGACAAACCAGGTTCAT
R:
AGGGTCAATGCATCAGGGAGA
Band lengths:
176-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]