MmuEX0002356 @ mm10
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9410584-9427870:+
Coord C1 exon
chr5:9410584-9410731
Coord A exon
chr5:9422302-9422390
Coord C2 exon
chr5:9427690-9427870
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCATATGTGTTACAGAGG
3' ss Score
6.16
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
CTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCAGTACGTGGACAACAACATCTTCTTTGAGTTCTTT
Seq A exon
AGGAAGGAGCCAGTGAGTGTGTGGATCGCCCACCCTGCACTACCAAAGACTATTTCCAGATCCATACCCCCTGTGACGAAGAAGGGAAG
Seq C2 exon
ACACAGATAATGTACAAGTGGATAGAGCCAAAAATCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCTCCTTGCAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATGGAACAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004_MULTIEX2-4/17=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF076998=GCC2_GCC3=PU(65.7=37.7)
Main Skipping Isoform:
ENSMUST00000069538fB5033
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTGATGACTGCACTGTG
R:
TCTGTGAGATCCTCCCTGCAG
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types