DreEX6064367 @ danRer10
Exon Skipping
Gene
ENSDARG00000042213 | si:ch211-233h19.2
Description
si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
Coordinates
chr18:8973110-8975195:+
Coord C1 exon
chr18:8973110-8973262
Coord A exon
chr18:8974831-8974919
Coord C2 exon
chr18:8975015-8975195
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCGTTTCTGACAATAAACAGCAG
3' ss Score
3.09
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGTGGCGTACACATCAGAGTGTTTCCCATGTAAGCCTGGTACTTTCAGTCACAGCCCAGGCTCGTCCTCGTGTGATTCCTGTCAACGGGACACATACTCTGGCCGTGGGGCAAGCTCCTGTACACCCTGCAACACAAAAACACACTACGCCT
Seq A exon
CAGAAGGCTCTGCCATGTGCAAAACTAGACCTCCGTGCACCGAGAAAGACTACATTCAGACCTACAGCACCTGTGATAGTGATGGAAAG
Seq C2 exon
ACTCGGGCCATATATAAGTGGGTAGAACCTCAGATCTGTTTGGATTCTGCTCCTGATGCAGTAACACTGCCACCTTCTGGTCAACGCAAGCCATGTCCACCATGTAATCCTGGTTTTTATAACAACGACACTGCCACTTGTTCTCCGTGCCCACCCGGATCTTACTCTGACGGAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042213-'6-12,'6-10,7-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=84.6)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(67.6=37.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGTACACCCTGCAACAC
R:
ACAAGTGGCAGTGTCGTTGTT
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]