MmuEX0002356 @ mm9
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9421505-9427870:+
Coord C1 exon
chr5:9421505-9421657
Coord A exon
chr5:9422302-9422390
Coord C2 exon
chr5:9427690-9427870
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCATATGTGTTACAGAGG
3' ss Score
6.16
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GGGTGGCATACACCTCAGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGCTCATTTAACTGCCAGATGTGTCCCAGAAACACCTATTCTGAGAAGGGTGCTAAAGAATGTATTAGGTGTAAGGAGGACTCCCAGTTTTCAG
Seq A exon
AGGAAGGAGCCAGTGAGTGTGTGGATCGCCCACCCTGCACTACCAAAGACTATTTCCAGATCCATACCCCCTGTGACGAAGAAGGGAAG
Seq C2 exon
ACACAGATAATGTACAAGTGGATAGAGCCAAAAATCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCTCCTTGCAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATGGAACAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004-'9-9,'9-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8)
A:
NO
C2:
PF076998=GCC2_GCC3=PU(65.7=37.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGCCAGGCACTTTCAGCA
R:
CTGTGAGATCCTCCCTGCAGA
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: