DreEX6049881 @ danRer10
Exon Skipping
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23772607-23773854:+
Coord C1 exon
chr8:23772607-23772712
Coord A exon
chr8:23772794-23772943
Coord C2 exon
chr8:23773766-23773854
Length
150 bp
Sequences
Splice sites
3' ss Seq
GACGGATCTTTCTTCCTCAGGGG
3' ss Score
8.27
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTACCGTTGAGCAGTGGTAACAATGTCTTGTACTGGAGAACAACAGGTTTCTCATTGTCTGCTAACACTGCCAAACCGGTACTGCTTAAGAATATTGCCATCTCAG
Seq A exon
GGGTCTCGTATACATCTGAGTGTTTTCACTGTAAGCCTGGTACTTACAGTGATAAACCAGGAGCTGCTCGCTGTGTCCCGTGTGCTGCTAATTCATACTCTAATAAAGGAGCCACTGCTTGTCAAACGTGTGATATGGACAAATATTCAG
Seq C2 exon
GTATTGGATCTGGAGCTTGTACACAGAGACCGGCCTGCAAAACCTCTGATTACTTCTACACCCACACACCCTGTGATTCCAGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF075629=NCD3G=WD(100=90.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCGTTGAGCAGTGGTAAC
R:
CTGAGCGCTGGAATCACAGG
Band lengths:
195-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]