BtaEX0019226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34336756-34344036:-
Coord C1 exon
chr3:34343931-34344036
Coord A exon
chr3:34343650-34343799
Coord C2 exon
chr3:34336756-34336844
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTGTGGTTCGTCCTCCCCAGGGG
3' ss Score
9.72
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCGAGCTAAATCGAGGCAATAACGTTCTCTACTGGAGAACCACAGCCTTCTCAGTGTGGTCCAAAGTCTCCAAGCCCGTGCTGGTGAGAAACATTGCCATAACAG
Seq A exon
GGGTGGCCTACACTTCAGAATGCTTCCCCTGCAAACCTGGCACGTACGCAGACCAGCAGGGCTCCTCTTCCTGCAAACTATGCCCAGCCAACTTTTATTCCAATAAGGGAGAAACTTCCTGTCACCAGTGTGACCCTGACAAATATTCAG
Seq C2 exon
AGAAAGGATCCTCCACCTGCAAAGCACGGCCAGCCTGCACAGATAAAGATTACTTCTACACTCACACAGCCTGTGATGCCAATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
PF076998=GCC2_GCC3=WD(100=86.3),PF075629=NCD3G=WD(100=56.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCTAAATCGAGGCAATAACG
R:
CTCTCCATTGGCATCACAGGC
Band lengths:
194-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development