MmuEX6073418 @ mm10
Exon Skipping
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108474961-108481369:-
Coord C1 exon
chr3:108481264-108481369
Coord A exon
chr3:108480976-108481125
Coord C2 exon
chr3:108474961-108475049
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATACCATTCTTTCTTCCTAGGGG
3' ss Score
10.37
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTTGAGCTAAATAGAGGCAATAACGTCCTCTATTGGAGAACCACAGCTTTCTCGGTGTGGTCCAAAGTGTCCAAGCCCGTGCTTGTTAGAAACATCGCCATAACAG
Seq A exon
GGGTGGCTTACACCTCCGAGTGTTTCCCCTGCAAGCCTGGCACATACGCTGCCAAGCAGGGCTCCCCTTTCTGCAAGCTTTGTCCAGCCAACTACTACTCAAACAAAGGAGAAACGTCCTGCCATCCGTGTGATGCTGACAAATACTCAG
Seq C2 exon
AAAAAGGATCTTCCACCTGCAAAGTGCGCCCAGCCTGCACAGACAAGGACTATTTCTACACCCACACAGCCTGTGATGCTCAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412-'12-11,'12-8,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
PF076998=GCC2_GCC3=WD(100=64.7)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTAAATAGAGGCAATAACGTCC
R:
CCTGAGCATCACAGGCTGTG
Band lengths:
188-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types