RnoEX0001085 @ rn6
Exon Skipping
Gene
ENSRNOG00000020272 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr2:211263597-211270831:-
Coord C1 exon
chr2:211270726-211270831
Coord A exon
chr2:211270437-211270586
Coord C2 exon
chr2:211263597-211263685
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATGCCATTCTTTCTTCCTAGGGG
3' ss Score
9.98
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTTGAGCTAAACAGAGGCAATAATGTCCTCTATTGGAGAACCACGGCGTTCTCAGTGTGGTCCAAAGTGTCCAAACCCGTGCTTGTTAGAAACATCGCCATAACAG
Seq A exon
GGGTAGCTTATACCTCTGAGTGTTTCCCCTGCAAGCCTGGCACCTATGCCGCCAAGCAGGGCTCCCCTTTCTGCAAGCTTTGTCCAGCCAACTCTTACTCAAACAAAGGAGAAACTTCATGTCATCCGTGTGATGCTGACAAATACTCAG
Seq C2 exon
AGAAAGGATCTTCCACCTGCAAAGTGCGCCCGGCCTGCACAGACAAGGATTACTTCTACACTCACACAGCCTGCGACGCTCAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020272-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
PF076998=GCC2_GCC3=WD(100=64.7),PF075629=NCD3G=WD(100=90.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGCTAAACAGAGGCAATAATGT
R:
CTCTCCCTGAGCGTCGCAG
Band lengths:
195-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]