GgaEX7010742 @ galGal4
Exon Skipping
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1131199-1131722:+
Coord C1 exon
chr26:1131199-1131304
Coord A exon
chr26:1131372-1131521
Coord C2 exon
chr26:1131634-1131722
Length
150 bp
Sequences
Splice sites
3' ss Seq
GAGCGCCGTCCCGCTGCCAGGGG
3' ss Score
5.38
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGGAGCTGAGCCGTGGTAACAACGTGCTCTACTGGAGGACCACAGCATTCTCCGTCTGGTCCAAGGTCCCCAAGCCCGTGCTGGTGCGGAACATCGGGATCACAG
Seq A exon
GGGTCGCCTACACCTCCGAGTGCTTCCCCTGCAAACCCGGCACCTTCGCCGCCGCCGCCGGCTCCTCCTCCTGCCAGCTGTGCCCCGCCAACAGCTTCTCCAGCAAAGGGGCCACCGCCTGCCAGCCCTGCGAGCCCACCGCCTATGCAG
Seq C2 exon
AGCCCGGCTCAGCATCCTGCAAGATGCGCCCGCCCTGCACTGATAAGGACTATTTCTACACACACACGGCGTGCGATGCCAATGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(1.7=2.8)
A:
PF076998=GCC2_GCC3=FE(84.7=100)
C2:
PF076998=GCC2_GCC3=PD(11.9=23.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTGAGCCGTGGTAA
R:
CTCCCCATTGGCATCGCAC
Band lengths:
194-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]