GgaEX6000361 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8090882-8092461:+
Coord C1 exon
chr1:8090882-8090987
Coord A exon
chr1:8091645-8091797
Coord C2 exon
chr1:8092373-8092461
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACCTGCAAATTACCTTACAGGAG
3' ss Score
7.66
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTAACCTTGAAATCAGGTAGTAATATACTATACTGGAGAACAACAGGGATTCTTATGGGGTCCAAAGTGGTAAAACCAGTTCTGGTGAAAAACATCACAATTGAAG
Seq A exon
GAGTTGCATATACATCTGAATGCTTCCCATGCAAGCCTGGTACTTACAGCGACAAACCAGGTTCATCTGGCTGCCAAGAATGTCCAAGAAATACTTACTCTGAGAAGGGAGCTAAAGAGTGCACCAAGTGTAAAGAAGAAATCTATTATGCAG
Seq C2 exon
AAGAGGGATCCAGTGCGTGTATAGAGCGTCCTCCATGCACAAGCAAAGACTTTTTCCAGATCCACACCCCGTGCGATAAGGAAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8),PF076998=GCC2_GCC3=PU(53.8=40.4)
C2:
PF076998=GCC2_GCC3=PD(43.6=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTATACTGGAGAACAACAGGGA
R:
TTTTCCTTCCTTATCGCACGGG
Band lengths:
170-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]