DreEX6064368 @ danRer10
Exon Skipping
Gene
ENSDARG00000042213 | si:ch211-233h19.2
Description
si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
Coordinates
chr18:8972917-8974919:+
Coord C1 exon
chr18:8972917-8973022
Coord A exon
chr18:8973110-8973262
Coord C2 exon
chr18:8974831-8974919
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTGATTTTTCTCTCTTTCAGGTG
3' ss Score
14.04
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGAATCTTAAATCTGGCACTAATATCCTGTACTGGAGAACTACTAGAATCTTGCTCGGCTCTAAAGCAGTCAAACCTGTGCTTTTGAAGAACATCTGGATTGAAG
Seq A exon
GTGTGGCGTACACATCAGAGTGTTTCCCATGTAAGCCTGGTACTTTCAGTCACAGCCCAGGCTCGTCCTCGTGTGATTCCTGTCAACGGGACACATACTCTGGCCGTGGGGCAAGCTCCTGTACACCCTGCAACACAAAAACACACTACGCCT
Seq C2 exon
CAGAAGGCTCTGCCATGTGCAAAACTAGACCTCCGTGCACCGAGAAAGACTACATTCAGACCTACAGCACCTGTGATAGTGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042213-'5-10,'5-8,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
PF076998=GCC2_GCC3=WD(100=84.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAAATCTGGCACTAATATCCTGT
R:
CCATCACTATCACAGGTGCTGT
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]