RnoEX6012481 @ rn6
Exon Skipping
Gene
ENSRNOG00000005818 | RGD1563349
Description
similar to RIKEN cDNA 9330182L06 [Source:RGD Symbol;Acc:1563349]
Coordinates
chr4:21636798-21638490:-
Coord C1 exon
chr4:21638385-21638490
Coord A exon
chr4:21637462-21637614
Coord C2 exon
chr4:21636798-21636886
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTCCTTTTCGTGCAGGAG
3' ss Score
9.93
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTAATGCTGAAATCAGGCACAAATATTCTGTACTGGAGGACGACAGGCATCCTTATGGGTTCTAAGGCAGTCAAGCCTGTGCTAGTAAAAAATATCACCATTGAAG
Seq A exon
GAGTGGCGTATACCTCGGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGCTCATTTAACTGCCAAATGTGCCCCAGGAACACCTATTCTGAGAAGGGTGCTAAAGAATGCATCAGGTGTAAGGAGGACTCCCAATTTTCAG
Seq C2 exon
AGGAAGGAGCCAGTGAGTGTGTGGATCGTCCACCCTGCACTACCAAAGACTATTTCCAGATCCATACTCCCTGTGATGAAGAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005818-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGCTGAAATCAGGCACAA
R:
TTCCCTTCTTCATCACAGGGAGT
Band lengths:
194-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]