BtaEX6026754 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33687999-33697128:+
Coord C1 exon
chr4:33687999-33688104
Coord A exon
chr4:33695979-33696131
Coord C2 exon
chr4:33697040-33697128
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCCGTTACCACACAGGGG
3' ss Score
7.98
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTAATGTTGAAATCAGGCACAAACATACTGTACTGGAGAACTACAGGCATCCTTATGGGTTCCAAGGCAGTCAAGCCAGTGTTGGTAAAAAATATCACAATTGAAG
Seq A exon
GGGTGGCCTACACATCAGAATGCTTTCCATGCAAGCCCGGCACCTTTAGCGACAAACCAGGTTCGTTCATCTGCCAAGTGTGTCCCAGAAACACCTATTCTGAGAAGGGAGCCAAAGAATGCATCAGGTGTGATGAGGACTCGCAATTTTCAG
Seq C2 exon
AAGAAGGATCCAGCGAGTGTATGGAGCGCCCTCCCTGTACCTCAAAAGACTATTTCCAGATCCACACTCCATGTGATGAGGAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023-'13-10,'13-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8),PF076998=GCC2_GCC3=PU(78.6=63.5)
C2:
PF076998=GCC2_GCC3=PD(19.0=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGTTGAAATCAGGCACAAACA
R:
TTTCCTTCCTCATCACATGGAGT
Band lengths:
194-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]