MmuEX6015883 @ mm10
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9410584-9480717:+
Coord C1 exon
chr5:9410584-9410731
Coord A exon
chr5:9421505-9421657
Coord C2 exon
chr5:9479196-9480717
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTCCTTTCCATACAGGGG
3' ss Score
10.85
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCAGTACGTGGACAACAACATCTTCTTTGAGTTCTTT
Seq A exon
GGGTGGCATACACCTCAGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGCTCATTTAACTGCCAGATGTGTCCCAGAAACACCTATTCTGAGAAGGGTGCTAAAGAATGTATTAGGTGTAAGGAGGACTCCCAGTTTTCAG
Seq C2 exon
GAAAAAGATGACCACTTTGAGTCTGTTCAGCTGAAATCCTCAAGATGCCCCAATATATGAAGAGACAATGCTGTAGCATTCAGGACCCCCATTAGGACTTGTCCTCACATCTGACATGGCTGTGATCTCACAAAGGAGGTGTGCCAATGAGAGGAGGAGGCAAAAATGCTGATTGCCTTATAACATGTCACATACTTTGTCAAACTACAGAAGACAGATGATGTGGGTCTCACTGAAGATGAAGCTTAACTCAGGAAGAGATTTAGCTGTATATACACATAACTGAAACCCAAGTTTAAGCCCACCAATGCACTGCTGAGCATGCCATATGATTACTGGGTAACTTTAATTCTTTATACTGTCTACATACAAAATATGTGTTGGAAGGCAGACATAAACATATGCCTTGTGTTTCCACGTATGTCTTGTTCTTGTACTTTGGGAGAAGATTTGGAAAAAAAATTAAGTTATAATTATTTTTACTTTTCTTTCTCCAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004_MULTIEX2-3/17=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTGATGACTGCACTGTG
R:
TTGGCACACCTCCTTTGTGAG
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types