HsaEX6008777 @ hg19
Exon Skipping
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:21945]
Coordinates
chr7:86567442-86569431:-
Coord C1 exon
chr7:86569326-86569431
Coord A exon
chr7:86568124-86568276
Coord C2 exon
chr7:86567442-86567530
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCATTACTGCACAGGGG
3' ss Score
7.17
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTAATGCTGAAATCAGGCACAAACATACTCTACTGGAGAACTACAGGCATCCTTATGGGTTCTAAGGCGGTCAAGCCTGTGCTGGTAAAAAATATCACAATTGAAG
Seq A exon
GGGTGGCGTACACATCAGAATGTTTTCCTTGCAAGCCAGGCACATTCAGCAACAAACCAGGTTCATTCAACTGCCAGGTGTGTCCCAGAAACACCTATTCTGAGAAAGGAGCCAAAGAATGTATAAGGTGTAAAGACGACTCTCAATTTTCAG
Seq C2 exon
AGGAAGGATCCAGTGAGTGTACAGAGCGCCCTCCCTGTACCACAAAAGACTATTTCCAGATCCATACTCCATGTGATGAAGAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGCTGAAATCAGGCACAAACA
R:
TTTCCTTCTTCATCACATGGAGT
Band lengths:
194-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)