DreEX6049884 @ danRer10
Exon Skipping
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23768663-23772523:+
Coord C1 exon
chr8:23768663-23768843
Coord A exon
chr8:23769594-23769741
Coord C2 exon
chr8:23772443-23772523
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGCATGTTTGCAGCTC
3' ss Score
9.04
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
CGTTCACTTGTAATGAAGGTGAATTTCTGGACATGAGGACTCAAGAGTGTCAGAAATGTGCTGCAGGGACCTATTCTCTCGGGACGGGTGTTGCTTTTGACGAGTGGGACAGTTTGCCCACCGGCTTCGTCACCCATGGCATCAACATGAACTTTGGAGACACATACACAAATTGCTCCAA
Seq A exon
CTCAACGTGGATCCCGAAAGGTGACTATATTGCCTCAAACACAGATGAGTGCACTTCAACTCTTTCATACGCCGTGAGTCTGAAGAAGCCCGGCTCTGTGTCCTTCCAGTACATCTATCCAGACAACCACATGTTTTTTGAGTTTTAT
Seq C2 exon
GTGCAGAATGATCAGTGTCAGTCCACAGACTCTCAGAACCGCTGGATGAGGATTTCAGAGAGCGACTGGGATTATCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAATTTCTGGACATGAGGAC
R:
TGATAATCCCAGTCGCTCTCTGA
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]