MmuEX6073415 @ mm9
Exon Skipping
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108284712-108291940:-
Coord C1 exon
chr3:108291748-108291940
Coord A exon
chr3:108285249-108285396
Coord C2 exon
chr3:108284712-108284780
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGGTCCTTGTTCTTTCACAGGTC
3' ss Score
10.71
5' ss Seq
TTTGTAAGC
5' ss Score
3.93
Exon sequences
Seq C1 exon
CCTTCTCTTGCAATGCCGGGGAATTTCTGGATATGAAGGACCAGTCCTGCAAGCCCTGCGCGGAGGGCCGCTACTCCCTCGGCACTGGCATCCGATTTGATGAGTGGGATGAGCTACCTCACGGCTTTGCCAGCCTCTCGGCCAACTTGGAGGTCGATGACAGCATCTCGGAGTCCACTGAGAACTGCACTTC
Seq A exon
GTCCAAGTGGGTTCCCCGGGGAGACTACATCGCCTCCAACACAGATGAATGCACCGCCACACTGATGTATGCCGTCAACCTAAAGCAGTCTGGCACCGTTAACTTTGAGTACTACTACCCGGACTCCAGCATCATCTTTGAATTTTTT
Seq C2 exon
GTCCAGAATGACCAGTGCCAGCCCAGTGCTGATGACTCCAGGTGGATGAAGACTACGGAGAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCCGGGGAATTTCTGGA
R:
TCCGTAGTCTTCATCCACCTGG
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: