BtaEX0019225 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34344620-34350511:-
Coord C1 exon
chr3:34350319-34350511
Coord A exon
chr3:34345157-34345304
Coord C2 exon
chr3:34344620-34344700
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGGCTCCCATTTCCTCACAGGTC
3' ss Score
10.43
5' ss Seq
TTTGTAAGC
5' ss Score
3.93
Exon sequences
Seq C1 exon
CCTTCTCTTGCAAAGCTGGGGAGTTTCTGGACATGAAGGACCAGTCGTGTAAGCCGTGTGCTGAGGGTCGCTACTCCCTTGGCACAGGCATCCGGTTCGATGAGTGGGATGAACTGCCCCATGGCTTTGCCAGCCTCTCAACCAACATGGAGATTGAGGACAGCACCTTGGAGTCCACCGAAAACTGTACTTC
Seq A exon
GTCCAAGTGGGTTCCGCTGGGAGACTATATCGCCTCCAACACAGACGAGTGCACGGCCACGCTGATGTATGCCGTCAACCTGAAGCAGTCCGGCACTGTTAACTTTGAATACTACTACCCAGACTCTAGCATCATCTTCGAGTTTTTT
Seq C2 exon
GTTCAGAATGACCAGTGCCAGCCCAATGCAGATGACTCGAGGTGGATGAAAACCACAGAGAAAGGATGGGAATTTCACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGCAAAGCTGGGGAGTT
R:
GTGGTTTTCATCCACCTCGAGT
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development