MmuEX6073415 @ mm10
Exon Skipping
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108481782-108489022:-
Coord C1 exon
chr3:108488830-108489022
Coord A exon
chr3:108482331-108482478
Coord C2 exon
chr3:108481782-108481862
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGGTCCTTGTTCTTTCACAGGTC
3' ss Score
10.71
5' ss Seq
TTTGTAAGC
5' ss Score
3.93
Exon sequences
Seq C1 exon
CCTTCTCTTGCAATGCCGGGGAATTTCTGGATATGAAGGACCAGTCCTGCAAGCCCTGCGCGGAGGGCCGCTACTCCCTCGGCACTGGCATCCGATTTGATGAGTGGGATGAGCTACCTCACGGCTTTGCCAGCCTCTCGGCCAACTTGGAGGTCGATGACAGCATCTCGGAGTCCACTGAGAACTGCACTTC
Seq A exon
GTCCAAGTGGGTTCCCCGGGGAGACTACATCGCCTCCAACACAGATGAATGCACCGCCACACTGATGTATGCCGTCAACCTAAAGCAGTCTGGCACCGTTAACTTTGAGTACTACTACCCGGACTCCAGCATCATCTTTGAATTTTTT
Seq C2 exon
GTCCAGAATGACCAGTGCCAGCCCAGTGCTGATGACTCCAGGTGGATGAAGACTACGGAGAAAGGATGGGAATTCCACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412-'7-6,'7-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCCGGGGAATTTCTGGA
R:
TCCGTAGTCTTCATCCACCTGG
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types