DreEX6056086 @ danRer10
Exon Skipping
Gene
ENSDARG00000052917 | si:ch211-202f3.3
Description
si:ch211-202f3.3 [Source:ZFIN;Acc:ZDB-GENE-080917-19]
Coordinates
chr17:45602382-45604808:+
Coord C1 exon
chr17:45602382-45602453
Coord A exon
chr17:45602796-45602956
Coord C2 exon
chr17:45604648-45604808
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTATTTGATTACAGGAT
3' ss Score
6.47
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
TTCACCTTTATGGAACACGGTCGATGATGAGGACCGCAAACAGCTTCTCGTATCTGATAATGGAGAGTTCTG
Seq A exon
GATGTCAATGAAAGATTTCCTTAGAACATTTGACAACATGGACATCTGTTGTAACTGTCCTGATTTTCTGGAAGGAAAGTCTGCATGCAAGTGGACCTCCAAGTCCCACAACGGCAGCTGGGTTCCTGGAAGTACAGCTGGAGGCTGCATGAACCACCCAG
Seq C2 exon
ACACCTTCTGCACCAACCCCCAGTTCTGGCTGAGAATTAATGAGATGGACAAGACGTGTGACCAAGGCCAAAACAATGTTCTGGTGTCCCTCATACAGAAACCTGACAAGAGGAACAGACGTCTGGCTCAACACCACGGAATTGGCTTCTGCGTGTTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052917-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.055 C2=0.019
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.2=100)
A:
PF0064816=Peptidase_C2=PD(6.5=34.5),PF0106717=Calpain_III=PU(16.0=43.6)
C2:
PF0106717=Calpain_III=FE(35.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACGGTCGATGATGAGG
R:
GCAAACACGCAGAAGCCAATT
Band lengths:
221-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]