MmuEX6029824 @ mm9
Exon Skipping
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:184533778-184537900:+
Coord C1 exon
chr1:184533778-184533852
Coord A exon
chr1:184534571-184534731
Coord C2 exon
chr1:184537725-184537900
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGGTTACTTTGTTCTTCAGGAT
3' ss Score
8.73
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGCACCTGAGTGGAATTACATAGATCCACAGAAGAAGGGAGAACTGGACAAGAGAGCAGAAGATGGGGAGTTCTG
Seq A exon
GATGTCCTTTTCGGATTTCTTGAAGCAGTTCTCCCGACTAGAGATATGCAACCTGTCCCCAGACTCTCTGAGCAGTGAGGAGATACACAAATGGAACCTGGTACTCTTCAACGGCCGCTGGACACGGGGTTCTACAGCCGGGGGCTGCCAGAACTACCCAG
Seq C2 exon
CCACTTACTGGACCAACCCCCAGTTTAAAATCCATTTGGACGAGGTGGATGAGGACCAGGAGGAGGGCACCAGTGAACCCTGCTGTACAGTGCTGCTGGGTCTGATGCAGAAGAATCGCAGACGTCAGAGGAGGATCGGCCAGGGCATGCTCAGCATAGGCTATGCTGTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-'7-9,'7-7,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
C2:
PF0106717=Calpain_III=FE(36.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCTGAGTGGAATTACAT
R:
CTGGTAGACAGCATAGCCTATG
Band lengths:
251-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: