RnoEX6045713 @ rn6
Exon Skipping
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101018063-101022041:+
Coord C1 exon
chr13:101018063-101018137
Coord A exon
chr13:101018849-101019009
Coord C2 exon
chr13:101021866-101022041
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCCTTTGTTCTTCAGGAT
3' ss Score
10.18
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGCACCTGAGTGGAATTACATAGATCCAAGGAGGAAGGAGGAGCTGGACAAGAAAGCAGAAGATGGCGAGTTCTG
Seq A exon
GATGTCCTTTTCGGATTTCTTGAAGCAGTACTCCCGACTGGAGATCTGCAACCTGTCCCCAGACTCTCTGAGCAGTGAAGAGATACACAAATGGAACCTAGTACTCTTCAACGGCCGCTGGACACGGGGTTCTACAGCCGGGGGCTGCCTGAACTACCCAG
Seq C2 exon
GCACGTACTGGACCAACCCCCAGTTTAAAATCCATTTGGATGAGGTGGATGAGGACCAGGAGGAGGGCACCAGTGAACCCTGCTGTACCGTGCTGCTGGGTCTGATGCAGAAGAATCGAAGACGTCAAAAGAGGATCGGCCAGGGCATGCTCAGCATAGGCTACGCTGTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-'12-12,'12-10,13-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(92.3=43.6)
C2:
PF0106717=Calpain_III=FE(36.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCTGAGTGGAATTACAT
R:
AGCATGCCCTGGCCGATC
Band lengths:
226-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]