DreEX0018811 @ danRer10
Exon Skipping
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26317204-26318725:-
Coord C1 exon
chr22:26318657-26318725
Coord A exon
chr22:26318382-26318542
Coord C2 exon
chr22:26317204-26317367
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTTCCCTTTGTACAGGAT
3' ss Score
9.63
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
TTCACCTGAATGGAACAGTGTTGCGGCATCAGAGCGTCCAGACGCCAGCGCTGAGGATGGTGAATTTTG
Seq A exon
GATGGCATTCTCCGAATTCCTCACCAATTACTCTCGTATAGAGATCTGCACTCTGACGCCGGATGCCATCACAGATGATTCAGTAAAACATTGGGCCGTGACAAATCATGACGGCACATGGAGGAGAGGCTCCACCGCTGGAGGCTGCAGAAACAATCCAT
Seq C2 exon
ACACATTTTGGATGAATCCACAATTTGTGGTGAAACTGGATGAAGAAAATGTCGAAGATAAGGAGAAGGGCTGCAGTTTTGTAGTGGGTCTGATTCAGAAGAACCGCCGGCGCCTGAGGAAAACTGGAGAGGATATGAACACTATTGGCTTTGCTATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(15.6=43.6)
C2:
PF0106717=Calpain_III=FE(35.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGTGTTGCGGCATC
R:
AAATAGCAAAGCCAATAGTGTTCA
Band lengths:
218-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]