GgaEX0013765 @ galGal3
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
NA
Coordinates
chr3:18807008-18808009:-
Coord C1 exon
chr3:18807935-18808009
Coord A exon
chr3:18807601-18807761
Coord C2 exon
chr3:18807008-18807177
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTTGGCATTGCCTCCCCCAGGAT
3' ss Score
6.64
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTGCCCAAACTGGAGTGGTGTTGACCCAGAGGTGCGGGAGCGGCTGACGAGGAGACATGAGGATGGGGAGTTTTG
Seq A exon
GATGGCCTTCAATGACTTCCTGAGGCACTACTCCCGCCTGGAAATCTGCAATCTGACTCCAGACACTCTGGCAAGTGACAGGTACAAGAAGTGGAGCCTGCTGAAGCTGGATGGGAACTGGCGGCGAGGAGCTACTGCGGGGGGCTGCAGGAATTACCCAA
Seq C2 exon
ACACTTTCTGGACGAATCCACAGTATTTAATCAAGCTGGAGGAAGAAGATGAGGATCCTGATGATCCTGAGGGGGGCTGCACATTTCTCATTGGCCTGATTCAGAAGCATCGGAGGAAGCAGAGGAAGATGGGAGAGGACATGCATACCATTGGCTTTGCAATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
C2:
PF0106717=Calpain_III=FE(35.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAACTGGAGTGGTGTTGA
R:
CTCATAAATTGCAAAGCCAATGGT
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]